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1

Complex Systems and Computational Biology Approaches to Acute Inflammation (A Framework for Model-based Precision Medicine) ||

Vodovotz, Yoram, An, Gary

Year:

2021

File:

PDF, 8.62 MB

2021

2

Early detection of pressure ulcer development following traumatic spinal cord injury using inflammatory mediators

Krishnan, Shilpa, Karg, Patricia, Boninger, Michael, Vodovotz, Yoram, Constantine, Greg, Sowa, Gwendolyn, Brienza, David

Journal:

Archives of Physical Medicine and Rehabilitation

Year:

2016

Language:

english

File:

PDF, 2.12 MB

english, 2016

3

A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration

Judy Day, Jonathan Rubin, Yoram Vodovotz, Carson C. Chow, Angela Reynolds, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 1.27 MB

english, 2006

4

Translational Systems Biology || A Brief History of Biomedical Research up to the Molecular Biology Revolution

Vodovotz, Yoram

Year:

2015

Language:

english

File:

PDF, 96 KB

english, 2015

5

Sepsis: From Pattern to Mechanism and Back

An, Gary, Namas, Rami A., Vodovotz, Yoram

Journal:

Critical Reviews in Biomedical Engineering

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

6

Translational Systems Approaches to the Biology of Inflammation and Healing

Vodovotz, Yoram, Constantine, Gregory, Faeder, James, Mi, Qi, Rubin, Jonathan, Bartels, John, Sarkar, Joydeep, Squires, Robert H., Okonkwo, David O., Gerlach, Jörg, Zamora, Ruben, Luckhart, Shirley, E

Journal:

Immunopharmacology and Immunotoxicology

Year:

2010

Language:

english

File:

PDF, 909 KB

english, 2010

7

IL-17A – A regulator in acute inflammation: Insights from in vitro , in vivo and in silico studies

Sud, Vikas, Abboud, Andrew, Tohme, Samer, Vodovotz, Yoram, Simmons, Richard L., Tsung, Allan

Journal:

Year:

2018

Language:

english

File:

PDF, 505 KB

english, 2018

8

Hepatic Encephalopathy in Children With Acute Liver Failure

Toney, Nicole A., Bell, Michael J., Belle, Steven H., Hardison, Regina M., Rodriguez-Baez, Norberto, Loomes, Kathleen M., Vodovotz, Yoram, Zamora, Ruben, Squires, Robert H.

Journal:

Journal of Pediatric Gastroenterology & Nutrition

Year:

2019

File:

PDF, 231 KB

2019

9

Translational systems biology of inflammation and healing

Journal:

Wound Repair and Regeneration

Year:

2010

Language:

english

File:

PDF, 100 KB

english, 2010

10

Prioritized Research for the Prevention, Treatment, and Reversal of Chronic Disease: Recommendations From the Lifestyle Medicine Research Summit

Vodovotz, Yoram, Barnard, Neal, Hu, Frank B., Jakicic, John, Lianov, Liana, Loveland, David, Buysse, Daniel, Szigethy, Eva, Finkel, Toren, Sowa, Gwendolyn, Verschure, Paul, Williams, Kim, Sanchez, Edu

Journal:

Frontiers in Medicine

Year:

2020

File:

PDF, 1.32 MB

2020

11

Biosimulation of acute phonotrauma: An extended model

Nicole Y. K. Li, Yoram Vodovotz, Kevin H. Kim, Qi Mi, Patricia A. Hebda, Katherine Verdolini Abbott

Journal:

The Laryngoscope

Year:

2011

Language:

english

File:

PDF, 873 KB

english, 2011

12

Laser Myocardial Revascularization Modulates Expression of Angiogenic, Neuronal, and Inflammatory Cytokines in a Porcine Model of Chronic Myocardial Ischemia

Shmuel Fuchs, Richard Baffour, Yoram Vodovotz, Matie Shou, Eugenio Stabile, Fermin O. Tio, Martin B. Leon, Ran Kornowski

Journal:

Journal of Cardiac Surgery

Year:

2001

Language:

english

File:

PDF, 2.97 MB

english, 2001

13

A thermodynamic tolerance assessment of single nucleotide polymorphisms relevant to acute inflammation and coagulation

Petr Pancoska, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 89 KB

english, 2007

14

A parallel implementation of an agent-based modeling platform with application in modeling calcium releases in cardiomyocytes

Maxim Mikheev, Alexey Solovyev, Anna Maltsev, John Bartels, Steven Chang, Qi Mi, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2009

Language:

english

File:

PDF, 52 KB

english, 2009

15

Intravascular radiation accelerates atherosclerotic lesion formation of hypercholesteremic rabbits

Yves Cottin, Marc Kollum, Frank D Kolodgie, Rosanna C Chan, Han-Soo Kim, Yoram Vodovotz, Renu Virmani, Ron Waksman, Hamid Yazdi

Journal:

Cardiovascular Radiation Medicine

Year:

2001

Language:

english

File:

PDF, 889 KB

english, 2001

16

Therapeutic strategies in inflammasome mediated diseases of the liver

Hoque, Rafaz, Vodovotz, Yoram, Mehal, Wajahat

Journal:

Journal of Hepatology

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

17

Translational Systems Biology || Agent-Based Modeling and Translational Systems Biology

Vodovotz, Yoram

Year:

2015

Language:

english

File:

PDF, 527 KB

english, 2015

18

Hemorrhagic Shock Activates Lung Endothelial Reduced Nicotinamide Adenine Dinucleotide Phosphate (NADPH) Oxidase Via Neutrophil NADPH Oxidase

Xiang, Meng, Yin, Lianhua, Li, Yuehua, Xiao, Guozhi, Vodovotz, Yoram, Billiar, Timothy R., Wilson, Mark A., Fan, Jie

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

19

Early detection of pressure ulcer development following traumatic spinal cord injury using inflammatory mediator concentrations

Krishnan, Shilpa, Karg, Patricia, Boninger, Michael, Vodovotz, Yoram, Constantine, Greg, Sowa, Gwendolyn, Brienza, David Michael

Journal:

Archives of Physical Medicine and Rehabilitation

Year:

2015

Language:

english

File:

PDF, 46 KB

english, 2015

20

Augmenting SurgeryviaMulti-scale Modeling and Translational Systems Biology in the Era of Precision Medicine: A Multidisciplinary Perspective

Kassab, Ghassan S., An, Gary, Sander, Edward A., Miga, Michael I., Guccione, Julius M., Ji, Songbai, Vodovotz, Yoram

Journal:

Annals of Biomedical Engineering

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

21

LOCAL EXPOSURE OF BONE COMPONENTS TO INJURED SOFT TISSUE INDUCES TOLL-LIKE RECEPTOR 4-DEPENDENT SYSTEMIC INFLAMMATION WITH ACUTE LUNG INJURY

Kobbe, Philipp, Kaczorowski, David J., Vodovotz, Yoram, Tzioupis, Christopher H., Mollen, Kevin P., Billiar, Timothy R., Pape, Hans-Christoph

Journal:

Year:

2008

Language:

english

File:

PDF, 1.36 MB

english, 2008

22

Thresholded Area Over the Curve of Spectrometric Tissue Oxygen Saturation as an Indicator of Volume Resuscitability in Porcine Hemorrhagic Shock

Zenker, Sven, Polanco, Patricio M., Kim, Hyung Kook, Torres, Andres, Vodovotz, Yoram, Clermont, Gilles, Pinsky, Michael R., Severyn, Donald A., Puyana, Juan Carlos

Journal:

The Journal of Trauma Injury Infection and Critical Care

Year:

2007

Language:

english

File:

PDF, 880 KB

english, 2007

23

NEUTROPHIL NAD(P)H OXIDASE IS REQUIRED FOR HEMORRHAGIC SHOCK-ENHANCED TLR2 UP-REGULATION IN ALVEOLAR MACROPHAGES IN RESPONSE TO LPS

Fan, Jie, Li, Yuehua, Vodovotz, Yoram, Billiar, Timothy R., Wilson, Mark A.

Journal:

Year:

2007

Language:

english

File:

PDF, 564 KB

english, 2007

24

The Role of NIGMS P50 Sponsored Team Science in Our Understanding of Multiple Organ Failure

Moore, Frederick A., Moore, Ernest E., Billiar, Timothy R., Vodovotz, Yoram, Banerjee, Anirban, Moldawer, Lyle L.

Journal:

Journal of Trauma and Acute Care Surgery

Year:

2017

Language:

english

File:

PDF, 2.47 MB

english, 2017

25

Dynamic Data-Driven Modeling for Ex Vivo Data Analysis: Insights into Liver Transplantation and Pathobiology

Sadowsky, David, Abboud, Andrew, Cyr, Anthony, Vodovotz, Lena, Fontes, Paulo, Zamora, Ruben, Vodovotz, Yoram

Journal:

Year:

2017

Language:

english

File:

PDF, 2.67 MB

english, 2017

26

Machine Perfusion of Porcine Livers with Oxygen-Carrying Solution Results in Reprogramming of Dynamic Inflammation Networks

Sadowsky, David, Zamora, Ruben, Barclay, Derek, Yin, Jinling, Fontes, Paulo, Vodovotz, Yoram

Journal:

Frontiers in Pharmacology

Year:

2016

Language:

english

File:

PDF, 3.46 MB

english, 2016

27

Immunocytochemical localization of latent transforming growth factor-β1 activation by stimulated macrophages

Hyonkyong Chong, Yoram Vodovotz, George W. Cox, M.H. Barcellos-Hoff

Journal:

Journal of Cellular Physiology

Year:

1999

Language:

english

File:

PDF, 773 KB

english, 1999

28

An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction

Silvia Daun, Jonathan Rubin, Yoram Vodovotz, Anirban Roy, Robert Parker, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

29

Using nonlinear model predictive control to optimize inflammation-modulating therapy

Judy Day, Jonathan Rubin, Yoram Vodovotz, Carson Chow, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 73 KB

english, 2007

30

Agent-based simulation of urinary tract infection leading to renal scarring

Nicole yee-key Li, Silvia Wognum, Karen Ravin, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 71 KB

english, 2007

31

Trauma/hemorrhage-induced inflammation in mice: Insights from data-driven models

Qi Mi, Gregory Constantine, Cordelia Ziraldo, Alexey Solovyev, Andres Torres, Rajaie Namas, Timothy Bentley, Ruben Zamora, Juan Carlos Puyana, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 51 KB

english, 2011

32

Models of Lower Extremity Damage in Mice: Time Course of Organ Damage and Immune Response

Christoph L. Menzel, Roman Pfeifer, Sophie S. Darwiche, Philipp Kobbe, Roop Gill, Richard A. Shapiro, Patricia Loughran, Yoram Vodovotz, Melanie J. Scott, Mazen S. Zenati, Timothy R. Billiar, Hans-Chr

Journal:

Journal of Surgical Research

Year:

2011

Language:

english

File:

PDF, 602 KB

english, 2011

33

A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior

Beatrice Rivière, Yekaterina Epshteyn, David Swigon, Yoram Vodovotz

Journal:

Mathematical Biosciences

Year:

2009

Language:

english

File:

PDF, 339 KB

english, 2009

34

A DNA microarray study of nitric oxide-induced genes in mouse hepatocytes: implications for hepatic heme oxygenase-1 expression in ischemia/reperfusion

Ruben Zamora, Yoram Vodovotz, Kulwant S Aulak, Peter K.M Kim, John M Kane III, Louis Alarcon, Dennis J Stuehr, Timothy R Billiar

Journal:

Year:

2002

Language:

english

File:

PDF, 316 KB

english, 2002

35

THE ROLE OF INITIAL TRAUMA IN THE HOST'S RESPONSE TO INJURY AND HEMORRHAGE

Lagoa, Claudio E., Bartels, John, Baratt, Arie, Tseng, George, Clermont, Gilles, Fink, Mitchell P., Billiar, Timothy R., Vodovotz, Yoram

Journal:

Year:

2006

Language:

english

File:

PDF, 278 KB

english, 2006

36

Mathematical models of the acute inflammatory response

Vodovotz, Yoram, Clermont, Gilles, Chow, Carson, An, Gary

Journal:

Current Opinion in Critical Care

Year:

2004

Language:

english

File:

PDF, 405 KB

english, 2004

37

Prospective analyses of cytokine mediation of sleep and survival in the context of advanced cancer

Steel, Jennifer. L., Terhorst, Lauren, Collins, Kevin P., Geller, David A., Vodovotz, Yoram, Kim, Juliana, Krane, Andrew, Antoni, Michael, Marsh, James W., Burke, Lora E., Butterfield, Lisa H., Penedo

Journal:

Psychosomatic Medicine

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

38

Lack of the Receptor for Advanced Glycation End-Products Attenuates E. coli Pneumonia in Mice

Ramsgaard, Lasse, Englert, Judson M., Manni, Michelle L., Milutinovic, Pavle S., Gefter, Julia, Tobolewski, Jacob, Crum, Lauren, Coudriet, Gina M., Piganelli, Jon, Zamora, Ruben, Vodovotz, Yoram, Engh

Journal:

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

39

Rationale and design of technology assisted stepped collaborative care intervention to improve patient-centered outcomes in hemodialysis patients (TĀCcare trial)

Roumelioti, Maria-Eleni, Steel, Jennifer L., Yabes, Jonathan, Vowles, Kevin E., Vodovotz, Yoram, Beach, Scott, Rollman, Bruce, Weisbord, Steven D., Unruh, Mark L., Jhamb, Manisha

Journal:

Contemporary Clinical Trials

Year:

2018

Language:

english

File:

PDF, 477 KB

english, 2018

40

Reduced hematopoietic function and enhanced radiosensitivity of transforming growth factor-β1 transgenic mice

Yoram Vodovotz, M. Scott Lucia, Anne-Marie DeLucca, James B. Mitchell, Jeffrey B. Kopp

Journal:

International Journal of Cancer

Year:

2000

Language:

english

File:

PDF, 5.01 MB

english, 2000

41

A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation

Angela Reynolds, Jonathan Rubin, Gilles Clermont, Judy Day, Yoram Vodovotz, G. Bard Ermentrout

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 691 KB

english, 2006

42

Agent-based simulation of bacterial sepsis: a teaching tool for science students

Yakov Pechersky, Keely Rasmussen, Von Nesdore, Qi Mi, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 82 KB

english, 2007

43

Parameter estimation and synthesis for systems biology: New algorithms for nonlinear and stochastic models

Sumit Jha, Alexandre Donze, Rupinder Khandpur, Joyeeta Dutta-Moscato, Qi Mi, Yoram Vodovotz, Gilles Clermont, Christopher Langmead

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 43 KB

english, 2011

44

Solving Immunology?

Vodovotz, Yoram, Xia, Ashley, Read, Elizabeth L., Bassaganya-Riera, Josep, Hafler, David A., Sontag, Eduardo, Wang, Jin, Tsang, John S., Day, Judy D., Kleinstein, Steven H., Butte, Atul J., Altman, Ma

Journal:

Trends in Immunology

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

45

The effects of a tart cherry beverage on reducing exercise-induced muscle soreness

Beals, Kim, Allison, Katelyn F., Darnell, Matthew, Lovalekar, Mita, Baker, Rachel, Nieman, David C., Vodovotz, Yoram, Lephart, Scott M.

Journal:

Isokinetics and Exercise Science

Year:

2017

Language:

english

File:

PDF, 223 KB

english, 2017

46

Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling

Dick, Thomas E., Molkov, Yaroslav I., Nieman, Gary, Hsieh, Yee-Hsee, Jacono, Frank J., Doyle, John, Scheff, Jeremy D., Calvano, Steve E., Androulakis, Ioannis P., An, Gary, Vodovotz, Yoram

Journal:

Frontiers in Physiology

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

47

Severely Injured Trauma Patients with High Circulating IL-15 Levels Display Worse Outcomes and Distinct Inflammatory Profiles, Suggesting a Role for Natural Killer Cell Activation

Lamparello, Ashley J., Zamora, Ruben, Namas, Rami A., Vodovotz, Yoram, Billiar, Timothy R.

Journal:

Journal of the American College of Surgeons

Year:

2019

Language:

english

File:

PDF, 110 KB

english, 2019

48

MPPED2 Polymorphism Is Associated With Altered Systemic Inflammation and Adverse Trauma Outcomes

Schimunek, Lukas, Namas, Rami A., Yin, Jinling, Barclay, Derek, Liu, Dongmei, el-Dehaibi, Fayten, Abboud, Andrew, Cohen, Maria, Zamora, Ruben, Billiar, Timothy R., Vodovotz, Yoram

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 1.04 MB

2019

49

Endotoxin uptake in mouse liver is blocked by endotoxin pretreatment through a suppressor of cytokine signaling-1–dependent mechanism

Melanie J. Scott, Shubing Liu, Richard A. Shapiro, Yoram Vodovotz, Timothy R. Billiar

Journal:

Year:

2009

Language:

english

File:

PDF, 2.48 MB

english, 2009

50

A simple, rapid, and convenient Luminex™-compatible method of tissue isolation

Derek Barclay, Ruben Zamora, Andres Torres, Rajaie Namas, David Steed, Yoram Vodovotz

Journal:

Journal of Clinical Laboratory Analysis

Year:

2008

Language:

english

File:

PDF, 136 KB

english, 2008

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